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Rrid:scr_017014

WebNov 9, 2024 · Raw reads from genome sequencing and assembly are deposited at the China National Gene Bank under reference number CNP0001160, which contains sample … WebWe used GenomeScope (RRID:SCR_017014) to conduct a genome survey and visualise the k-mer plot . While we did not deem the k -mer counting method sufficiently accurate for …

A chromosome-level genome assembly of - ScienceDirect

WebDNA copy-number analysis on diagnostic biopsies of 181 pediatric patients with T cell ALL (T-ALL) using array-comparative genomic hybridization and/or multiplex ligation-dependent probe amplification (MLPA) revealed recurrent monoallelic deletions affecting the chromosomal band 16q in sixteen patients (9%; Table S1).The minimal deleted area … WebMar 1, 2024 · 2.2. Genome assembly and assessment. Illumina paired-end reads were used as the first quality control by FASTP (fastp, RRID: SCR_016962) [16] with the default … ninteen or nineteen which is correct https://redcodeagency.com

A chromosome-level genome assembly for the beet …

WebNov 9, 2024 · Raw reads from genome sequencing and assembly are deposited at the China National Gene Bank under reference number CNP0001160, which contains sample information (CNS0315939), Hi-C raw data (CNX0286336) and stLFR raw data (CNX0286337). The project also has been deposited at NCBI under accession ID … WebAug 18, 2024 · Four types of noncoding RNAs were annotated using tRNAscan-SE (tRNAscan-SE, RRID:SCR_010835) v1.23 and the Rfam (Rfam, RRID:SCR_007891) … WebDec 21, 2024 · The histograms of the k -mer occurrences were processed by GenomeScope (GenomeScope, RRID:SCR_017014) [ 26 ], which estimated a genome haploid size of 653 and 616 Mb with ∼71% and 74% of unique content and a heterozygosity level of 0.65% and 0.77% from Illumina and BGI reads, respectively. Assembly of genomes nintedo pro controller awful bluetooth

(PDF) Chromosome-level de novo genome assembly of

Category:A chromosome-level genome assembly of Plantago ovata

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Rrid:scr_017014

IJMS Free Full-Text The Reprimo-Like Gene Is an Epigenetic …

WebJan 12, 2024 · GenomeScope (GenomeScope, RRID:SCR_017014) v1.0 [40] predicted a smaller genome of 794 Mb 228. from the same data (Figure S1b). 230. CC-BY-NC-ND 4.0 International license made available under a WebSep 23, 2024 · The k -mer count histogram was analyzed by the online version of GenomeScope (GenomeScope, RRID:SCR_017014) [ 37] and the heterozygosity of the genome was estimated at 0.0383% ( Supplementary Fig. S2 ). The Long Terminal Repeat (LTR) Assembly Index (LAI) [ 38] metric was used to evaluate assembly continuity in DM …

Rrid:scr_017014

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WebJan 27, 2024 · Corrected PacBio reads generated from Canu v2.1.1 (Canu, RRID:SCR_015880) 49 were used to predict P. ovata genome size using genomescope2 v2.0 (GenomeScope, RRID:SCR_017014) 21 and findGSE v0.10 ... WebProper Citation: GenomeScope (RRID:SCR_017014) Description: Open source software package for fast genome analysis from unassembled short reads. Used to estimate …

WebSep 19, 2024 · Here, we present a highly contiguous, fully phased, chromosome-level genome of ‘Honeycrisp’ apples, using PacBio HiFi, Omni-C, and Illumina sequencing … WebВ рубрике как это работает у них Research Resource Identifiers (RRIDs) [1] научный проект по систематизации общедоступных научных ресурсов изначально в области биоинформатики, а далее и для научных ди...

WebThe RRID index is a list of key biological reagents and resources aggregated from the most authoritative data sources for each resource type. Each of the records is also available … WebApr 14, 2024 · Mouse Lewis lung carcinoma (LLC; ATCC, catalog no. CRL-1642, RRID:CVCL_4358) cell line was purchased from ATCC (RRID:SCR_001672). LLC-eGFP cell line was a gift from Professor Robert Brink. B16F10–3C melanoma cell line was a gift from Professor Wolfgang Weninger. Murine AT-3 mammary carcinoma (RRID:CVCL VR89) cell …

WebTRIM28, a multi-domain protein, is crucial in the development of mouse embryos and the maintenance of embryonic stem cells’ (ESC) self-renewal potential. As the epigenetic factor modulating chromatin structure, TRIM28 regulates the expression of numerous genes and is associated with progression and poor prognosis in many types of cancer. Because of …

WebAnalyses were performed using the R software environment (RRID: SCR_001905). For in vitro functional assays, differences between groups were assessed by the Kruskal-Wallis and Dunn’s multiple comparison test using GraphPad Prism 8 (GraphPad Software, San Diego, CA, USA, RRID: SCR_002798). Three independent experiments were performed for … null steering algorithmWebAug 17, 2024 · The T. molitor genome size was estimated using GenomeScope 15 (GenomeScope, RRID:SCR_017014) v1 with Illumina reads (Table S1, Extended data) and … null squad star warsWebApr 14, 2024 · The Epigenomic Services from Diagenode (RRID:SCR_014807) carried out this assay. EPIC methylation array processing. After whole-genome amplification and enzymatic fragmentation, the samples were hybridized to the BeadChip, and scanning was conducted with Illumina iScan (RRID:SCR_016388). Idat files were exported and analyzed … nullstones warframe farmWebProper Citation: GenomeScope (RRID:SCR_017014) Description: Open source software package for fast genome analysis from unassembled short reads. Used to estimate … null star warsWebAug 14, 2024 · 81 mer distributions using GenomeScope v1.0.0 (GenomeScope, RRID:SCR_017014) [14]. The histogram of 82 k-mer frequencies was estimated with 21 … null stream line:1 ch:0nintei-kaigo office.city.kobe.lg.jpWebMar 1, 2024 · 2.2. Genome assembly and assessment. Illumina paired-end reads were used as the first quality control by FASTP (fastp, RRID: SCR_016962) [16] with the default parameter.JELLYFISH (v2.2.10) (Jellyfish, RRID: SCR_005491) [17] and PLATANUS (v2.2.2) (Platanus, RRID: SCR_015531) [18] were employed to estimate the genome size based on … null strategies reduce prison overcrowding